Our paper presenting our integrated pipeline for ChIP-Seq has just been published in PLoS One. Here is a copy of the abstract below: Please check it out. Comments welcome!
Positions available in the rglab!
The rglab is currently looking for a scientific programmer and a postdoctoral fellow. We also have openings for several RAs. We seek people with strong computational skills and interests in immunology and/or vaccine development. Please visit the Jobs page for more info, or the Hutch jobs webpage at http://www.fhcrc.org. Note ...
Welcome to the rglab!
We conduct research in computational biology and statistical genomics with applications to high throughput biological assays and immunology. The rglab is located within the Vaccine and Infection Disease Division at the Fred Hutchinson Cancer Research Center in Seattle.

Import flowJo workspaces into R / BioConductor
We have a new R package for flow cytometry. flowWorkspace allows one to import flowJo XML workspaces (schema version 2.0) into R and automatically replicate the workflow using the BioConductor flowCore tools. The package takes care of proper compensation, transformation, and gating. This means you can now compare automated gating methods against manual gates derived [...]
Contact Information
1100 Fairview Avenue North, M2-C200
PO Box 19024
Seattle, WA 98109-1024
Phone: 206-667-4076
Fax: 206-667-4378
Email: rgottard AT fhcrc.org
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Positions available in the rglab!
October 24, 2011
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FlowCAP-2
August 13, 2011
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ChIP-Seq Workshop at BioC 2011
July 6, 2011
- PICS: Probabilistic Inference for ChIP-Seq March 20, 2009
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rGADEM soon to support Grand Central Dispatch
April 17, 2010
- ChIP-Seq pipeline: PICS, rGADEM, MotIV April 15, 2010
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Raphael Gottardo: Carlos, Thanks for your kind message. We are abou...
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Carlos Torroja: Hi! I've been using your PICS and rGADEM packages...
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Raphael Gottardo: Should be soon. We will submit a version to Biocon...
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