Our paper presenting our integrated pipeline for ChIP-Seq has just been published in PLoS One. Here is a copy of the abstract below: Please check it out. Comments welcome!
Positions available in the rglab!
The rglab is currently looking for a scientific programmer and a postdoctoral fellow. We also have openings for several RAs. We seek people with strong computational skills and interests in immunology and/or vaccine development. Please visit the Jobs page for more info, or the Hutch jobs webpage at http://www.fhcrc.org. Note ...
Import flowJo workspaces into R / BioConductor
We have a new R package for flow cytometry. flowWorkspace allows one to import flowJo XML workspaces (schema version 2.0) into R and automatically replicate the workflow using the BioConductor flowCore tools. The package takes care of proper compensation, transformation, and gating. This means you can now compare automated gating methods against manual gates derived [...]
